Stuart M. Brown

Education

Ph.D. 1992, Cornell; B.S. 1983, Michigan.

Areas of Research/Interest

Bioinformatics in medicine; molecular biology.
  1. Barry, AE; Leliwa-Sytek, A; Tavul, L; Imrie, H; Migot-Nabias, F; Brown, SM; McVean, GAV; Day, KP. "Population Genomics of the immune evasion (var) genes of Plasmodium falciparum". PLoS pathogens. 2007; 3: 12193 (#J0129498)
  2. Keays, DA; Tian, G; Poirier, K; Huang, GJ; Siebold, C; Cleak, J; Oliver, PL; Fray, M; Harvey, RJ; Molnar, Z; Pinon, MC; Dear, N; Valdar, W; Brown, SDM; Davies, KE; Rawlins, JNP; Cowan, NJ; Nolan, P; Chelly, J; Flint, J. "Mutations in alpha-tubulin cause abnormal neuronal migration in mice and lissencephaly in humans". Cell. 2007; 128: 45 (#J0124855)
  3. Brown, Seth M; Myssiorek, David. "Lateral thyrotomy for excision of laryngeal paragangliomas". Laryngoscope. 2006; 116: 157 (#J0128913)
  4. Inglese, M; Brown, S; Johnson, G; Law, M; Knopp, E; Gonen, O. "Whole-brain N-acetylaspartate spectroscopy and diffusion tensor imaging in patients with newly diagnosed gliomas: a preliminary study". AJNR. American journal of neuroradiology. 2006; 27: 2137 (#J0125171)
  5. Zhang, Xin-Min; Chang, Qing; Zeng, Lin; Gu, Judy; Brown, Stuart; Basch, Ross S. "TBLR1 regulates the expression of nuclear hormone receptor co-repressors". BMC Cell Biology. 2006; 7: 31 (#J0120460)
  6. Kuriakose MA; Chen WT; He ZM; Sikora AG; Zhang P; Zhang ZY; Qiu WL; Hsu DF; McMunn-Coffran C; Brown SM; Elango EM; Delacure MD; Chen FA. "Selection and validation of differentially expressed genes in head and neck cancer". Cellular & molecular life sciences: CMLS. 2004; 61: 1372 (#J0069782)
  7. Raju B; Hoshino Y; Kuwabara K; Belitskaya I; Prabhakar S; Canova A; Gold JA; Condos R; Pine RI; Brown S; Rom WN; Weiden MD. "Aerosolized gamma interferon (IFN-gamma) induces expression of the genes encoding the IFN-gamma-inducible 10-kilodalton protein but not inducible nitric oxide synthase in the lung during tuberculosis". Infection & immunity. 2004; 72: 1275 (#J0066413)
  8. Wang Q; Brown S; Roos DS; Nussenzweig V; Bhanot P. "Transcriptome of axenic liver stages of Plasmodium yoelii". Molecular & biochemical parasitology. 2004; 137: 161 (#J0078561)
  9. Brown SM. "Bioinformatics becomes respectable". Biotechniques. 2003; 34: 1124 (#J0053226)
  10. Brown, Stuart M; Hay, John G; Ostrer, Harry. "Essentials of medical genomics". Hoboken NJ : Wiley-Liss, 2003. 2003; xiv, 274 (#B0001310)
  11. Matuschewski K; Ross J; Brown SM; Kaiser K; Nussenzweig V; Kappe SH. "Infectivity-associated changes in the transcriptional repertoire of the malaria parasite sporozoite stage". Journal of biological chemistry. 2002; 277: 41948 (#J0053496)
  12. Santori FR; Brown SM; Vukmanovic S. "Genomics-based identification of self-ligands with T cell receptor-specific biological activity". Immunological reviews. 2002; 190: 146 (#J0047873)
  13. Santori FR; Kieper WC; Brown SM; Lu Y; Neubert TA; Johnson KL; Naylor S; Vukmanovic S; Hogquist KA; Jameson SC. "Rare, structurally homologous self-peptides promote thymocyte positive selection". Immunity. 2002; 17: 131 (#J0044754)
  14. Boorstein RJ; Cummings A Jr; Marenstein DR; Chan MK; Ma Y; Neubert TA; Brown SM; Teebor GW. "Definitive Identification of Mammalian 5-Hydroxymethyluracil DNA N-Glycosylase Activity as SMUG1". Journal of biological chemistry. 2001; 276: 41991 (#J0025956)
  15. Kappe SH; Gardner MJ; Brown SM; Ross J; Matuschewski K; Ribeiro JM; Adams JH; Quackenbush J; Cho J; Carucci DJ; Hoffman SL; Nussenzweig V. "Exploring the transcriptome of the malaria sporozoite stage". Proceedings of the National Academy of Sciences of the United States of America. 2001; 98: 9895 (#J0027716)
  16. Santori FR; Brown SM; Lu Y; Neubert TA; Vukmanovic S. "Cutting Edge: Positive Selection Induced by a Self-Peptide with TCR Antagonist Activity". Journal of immunology. 2001; 167: 6092 (#J0025953)
  17. Brown SM. "Get your bioinformatics on the Web!". Biotechniques. 2000; 28: 244 (#J0009131)
  18. Brown SM. "Dealing with Genome Project data". Biotechniques. 1999; 26: 266 (#J0003783)
  19. Brown SM. "Phylogenetics on the Web". Biotechniques. 1999; 27: 1146 (#J0009187)
  20. Brown SM. "Snapping up SNPs". Biotechniques. 1999; 26: 1090 (#J0000289)
  21. Brown, SM. "Advanced similarity searches on the Web: Gapped BLAST, PSI-BLAST, FASTA 3.0 and INCA". Biotechniques. 1998; 25: 214 (#J0094126)
  22. Brown SM. "Analyzing protein families and domains on the Web". Biotechniques. 1998; 25: 596 (#J0002359)
  23. Brown, SM. "Sequence alignment on the Web". Biotechniques. 1998; 24: 944 (#J0094336)
  24. Brown SM. "Sequence similarity searches on the World Wide Web". Biotechniques. 1998; 24: 248 (#J0002681)

Contact Information

Stuart M. Brown Phone: (212) 263-7689