Manpreet Katari

Clinical Professor of Biology; Coordinator of Computational Studies

Education

  • 2004 Ph.D. (Genetics), SUNY Stony Brook
  • 1997 B.S. (Biochemistry), SUNY Buffalo

Areas of Research/Interest

Bioinformatics, Systems Biology, Functional Genomics, Comparative Genomics.

Fellowships/Honors

NRSA (NIH) FELLOWSHIP: Networks of nitrogen regulated genes in seed (Sep ’05 - Aug ‘07)

Publications

Date of these PubMed search results: March 24 2020
Get the current Pubmed search results

  1. WRKY1 Mediates Transcriptional Regulation of Light and Nitrogen Signaling Pathways.
    Plant Physiol (2019 Nov) PMC6836853 free full-text archive
    Heerah S, Katari M, Penjor R, Coruzzi G, Marshall‑Colon A
  2. Molecular Basis of Disease Resistance in Banana Progenitor Musa balbisiana against Xanthomonas campestris pv. musacearum.
    Sci Rep (2019 May 7) PMC6504851 free full-text archive
    Tripathi L, Tripathi JN, Shah T, Muiruri KS, Katari M
  3. A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus.
    Sci Rep (2017 Aug 29) PMC5575035 free full-text archive
    Amuge T, Berger DK, Katari MS, Myburg AA, Goldman SL, Ferguson ME
  4. QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii.
    Front Plant Sci (2017) PMC5519584 free full-text archive
    Nzuki I, Katari MS, Bredeson JV, Masumba E, Kapinga F, Salum K, Mkamilo GS, Shah T, Lyons JB, Rokhsar DS, Rounsley S, Myburg AA, Ferguson ME
  5. QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert.
    Theor Appl Genet (2017 Oct) PMC5606945 free full-text archive
    Masumba EA, Kapinga F, Mkamilo G, Salum K, Kulembeka H, Rounsley S, Bredeson JV, Lyons JB, Rokhsar DS, Kanju E, Katari MS, Myburg AA, van der Merwe NA, Ferguson ME
  6. TCF7L1 Modulates Colorectal Cancer Growth by Inhibiting Expression of the Tumor-Suppressor Gene EPHB3.
    Sci Rep (2016 Jun 23) PMC4917863 free full-text archive
    Murphy M, Chatterjee SS, Jain S, Katari M, DasGupta R
  7. Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.
    Plant Physiol (2015 Aug) PMC4528727 free full-text archive
    Obertello M, Shrivastava S, Katari MS, Coruzzi GM
  8. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants.
    Genome Biol (2015 Apr 19) PMC4464704 free full-text archive
    Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM
  9. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics (2013 Oct 11) PMC3906980 free full-text archive
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA
  10. Plasticity regulators modulate specific root traits in discrete nitrogen environments.
    PLoS Genet (2013) PMC3764102 free full-text archive
    Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD
  11. A functional phylogenomic view of the seed plants.
    PLoS Genet (2011 Dec) PMC3240601 free full-text archive
    Lee EK, Cibrian‑Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R
  12. An international bioinformatics infrastructure to underpin the Arabidopsis community.
    Plant Cell (2010 Aug) PMC2947164 free full-text archive
    International Arabidopsis Informatics Consortium
  13. Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.
    BMC Syst Biol (2010 Aug 12) PMC2933594 free full-text archive
    Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM
  14. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.
    Genome Biol Evol (2010 Jul 12) PMC2997538 free full-text archive
    Cibrian‑Jaramillo A, De la Torre‑Barcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R
  15. In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana.
    BMC Bioinformatics (2009 Dec 21) PMC2803859 free full-text archive
    Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM
  16. VirtualPlant: a software platform to support systems biology research.
    Plant Physiol (2010 Feb) PMC2815851 free full-text archive
    Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutierrez RA
  17. The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.
    PLoS One (2009 Jun 2) PMC2685480 free full-text archive
    de la Torre‑Barcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R
  18. An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.
    BMC Syst Biol (2008 Apr 4) PMC2335094 free full-text archive
    Thum KE, Shin MJ, Gutierrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM
  19. Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1.
    Proc Natl Acad Sci U S A (2008 Mar 25) PMC2290744 free full-text archive
    Gutierrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM
  20. Sungear: interactive visualization and functional analysis of genomic datasets.
    Bioinformatics (2007 Jan 15) PMID: 17018536
    Poultney CS, Gutierrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE
  21. ESTimating plant phylogeny: lessons from partitioning.
    BMC Evol Biol (2006 Jun 15) PMC1564041 free full-text archive
    de la Torre JE, Egan MG, Katari MS, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R
  22. EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes.
    BMC Genomics (2005 Oct 15) PMC1285361 free full-text archive
    Brenner ED, Katari MS, Stevenson DW, Rudd SA, Douglas AW, Moss WN, Twigg RW, Runko SJ, Stellari GM, McCombie WR, Coruzzi GM
  23. Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana.
    Genome Res (2005 Apr) PMC1074364 free full-text archive
    Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR
  24. Expressed sequence tag analysis in Cycas, the most primitive living seed plant.
    Genome Biol (2003) PMC329417 free full-text archive
    Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM
  25. Evolution and microsynteny of the apyrase gene family in three legume genomes.
    Mol Genet Genomics (2003 Dec) PMID: 14598165
    Cannon SB, McCombie WR, Sato S, Tabata S, Denny R, Palmer L, Katari M, Young ND, Stacey G
  26. Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis.
    Genomics (2001 Feb 15) PMID: 11247670
    Wines ME, Lee L, Katari MS, Zhang L, DeRossi C, Shi Y, Perkins S, Feldman M, McCombie WR, Holdener BC
  27. Gangliosides of monocyte-derived macrophages of adults with advanced HIV infection show reduced surface accessibility.
    J Leukoc Biol (1998 Sep) PMID: 9738657
    Berenson CS, Gallery MA, Katari MS, Foster EW, Pattoli MA